| Gene/Protein | Genetic Alterations | Epigenetic Alterations | Expression/Distribution |
| PTEN | Mutations/Deletion | Hypermethylation | Deactivation/Downregulation |
| AKT | Activation/Overexpression | ||
| PIK3CA | Mutation | ||
| APC | Hypermethylation | Activation/Overexpression | |
| b-Catenin | Mutation | Hypermethylation | Abnormal accumulations |
| K-RAS | Mutation | ||
| VEGF-C/VEGF-D | Activation/Overexpression | ||
| VEGFR-2 | Activation/Overexpression | ||
| STAT3/5 | Activation/Overexpression | ||
| HER2/HER4 | Amplification | Activation/Overexpression | |
| P53 | Mutation | ||
| P16/INK4a | Mutation | Hypermethylation | Deactivation/downregulatin |
| FGFR2 | Activation/Downregulation | ||
| BCL2 | Mutation | ||
| RASSF1A | Hypermethylation | ||
| MGMT | Hypermethylation | ||
| RARb2 | Hypermethylation | ||
| 14-3-3σ | Hypermethylation | ||
| MLH1 | Hypermethylation | ||
| Bax | Muation | ||
| Cyclin D1 | Overexpression | ||
| Survivin | Overexpression | ||
| ER, PR | Overexpression | ||
| EZH2 | Overexpression | ||
| BM1 | Overexpression | ||
| b-catenin | Overexpression | ||
| E-cadherin | Hypermethylation | Overexpression | |
| RUNX3 | Hypermethylation | ||
| CDH13 | Hypermethylation | ||
| MLH1 | Hypermethylation | ||
| HOXa1, 9, 10, 11 | Hypermethylation | ||
| HOXB5 | Hypermethylation | ||
| HOXPX | Hypermethylation | ||
| BAT25,BAT26, NR21, NR24, NR27 | MSI (Microsatellite instability) |